PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470365.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 522aa    MW: 58243.2 Da    PI: 4.1944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08260307347
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+el+ ++v   +       W+  a +++  R++k+++s+++++
   XP_016470365.1 260 KWSEEEEELFHEVVLSNPASlgknFWNHLAIEFP-SRSRKELVSYYFNV 307
                      8*************6654445555**********.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-4255318IPR009057Homeodomain-like
SMARTSM007172.2E-4257310IPR001005SANT/Myb domain
PfamPF002499.2E-7260307IPR001005SANT/Myb domain
CDDcd001670.00154260308No hitNo description
PROSITE profilePS500906.168260308IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MVQKRSYGEE ELYEVSSKQP RHEPSCQLVS VLELSRESVA VKAYASGGDE ENSSRTNADS  60
KPDSHNVAEA LFSSEKETEM GIYGSASNSS WPTSCTSEED IRPEARFHIL MSPEYYYFDN  120
PFRAAAHHGE MHSSLLCDPP QKMVPIGPDF QAELPEWVAF GNQDKLYVEG IHETLCPSSQ  180
ADENKLAGTS IITMPAMELC ADHGENIVER GGECPCEDIG SIRCVRLHIM ETREKLKLDL  240
GEETFVRLGF CDMGEVVAEK WSEEEEELFH EVVLSNPASL GKNFWNHLAI EFPSRSRKEL  300
VSYYFNVFIL RKRAEQNRFD PLNIDSDNDE WLEIVGDADQ EANMTDEDEE SVVESPAYHN  360
DLSGNGIHEE LDKHHEDVGD ATWEDYKAVN VCSTKVFTDV PESCPGELFD SNSSYKLSLQ  420
PQDQGLSNKV VKQEVQDGSC TTVAAGVTSE SSLGQTNNGK CWANDITGMG SGTEHDRVFG  480
PCSCKEWDVG YLSCCARNEV DLLPTCTMIE EVFGDGAWIY KS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623741.10.0PREDICTED: uncharacterized protein LOC104114899
RefseqXP_016470365.10.0PREDICTED: uncharacterized protein LOC107792646
TrEMBLM1CA300.0M1CA30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000631090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15141625